Shiny AnalyzAIRR

Calculation in progress..

Sequence number overview

Count distribution

Calculation in progress..

Sequence number overview

Count distribution

Export table

Calculation in progress..

Export table

Calculation in progress..

Export table

Calculation in progress..

Export table

Calculation in progress..

Select a level

Set a count threshold

Filtered table

Download RDS

Calculation in progress..

Select a level

Enter a sequence

Filtered table

Download RDS

Calculation in progress..

Filtered table

Download RDS

Calculation in progress..

Filtered table

Download RDS

Calculation in progress..

Select a level

Filtered table

Download RDS

Calculation in progress..

Select a level

Private singletons

Filtered table

Download RDS

Calculation in progress..

Select a level

Set a proportion

Filtered table

Download RDS

Calculation in progress..

Down-sampling
Shannon-based normalization

Set a sample size

Set a seed

With replacement

Perform down-sampling

Normalized table

Download RDS

Calculation in progress..

Results

Select a level

Calculation in progress..

Perform a shannon normalization

Normalized table

Download RDS

Calculation in progress..

Results

Select a level

Calculation in progress..

Perform a statistical test (optional)

Calculation in progress..

Select a level

Select an index

Perform a statistical test (optional)

Calculation in progress..

Hill Diversity

Select a level

Calculation in progress..

Select a level

Select a scale for fractions

Select a calculation type

Perform a statistical test (optional)

Calculation in progress..

Select a level

Select a scale

Select number of ranks (optional)

Calculation in progress..

Select a level

Select a scale

Perform a statistical test (optional)

Calculation in progress..

Select a level

Set a fold-change threshold

Set a pvalue threshold

Calculation in progress..

Table of values

Export table

Calculation in progress..

Metadata statistics
- Single statistic
- Pairwise statistics
Detailed repertoire level statistics

Calculation in progress..

Select a level

Select a scale

Export table

Calculation in progress..

Richness estimation
- Rarefaction analysis
- Chao estimation
Diversity calculation
- Single diversity index
- Generalized diversity

Calculation in progress..

Select a Chao index

Calculation in progress..

Select an index

Select a level

Calculation in progress..

Value table

Export table

Calculation in progress..

Hill Diversity

Select a level

Calculation in progress..

Value table

Export table

Calculation in progress..

Occurrence intervals
Rank distribution

Select a level

Select a statistics scale

Select a calculation type

Calculation in progress..

Select a scale

Select a level

Select maximum rank (optional)

Calculation in progress..

Sequence number overview

Count distribution

Sequence number overview

Count distribution

Filtered table

Filtered table

Filtered table

Filtered table

Filtered table

Filtered table

Filtered table

Normalized table

Results

Normalized table

Results

Original heatmap

Selected sub-heatmap

Original heatmap

Selected sub-heatmap

Table of values

Value table

Value table

Session info

Report